PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g09990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 322aa    MW: 35641.5 Da    PI: 4.96
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g09990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.5e-14104155155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++++h  +Er+RR+++N  ++ Lr+l+P+    ++k+ + a+i e +v+YI++Lq
  Vradi06g09990.1 104 QKVSHITVERNRRKQMNYNLSVLRSLMPSF---YAKRGDQASIIEGVVDYINELQ 155
                      6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-13101159No hitNo description
SuperFamilySSF474593.14E-16102171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.602103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13105166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-8109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPQKTPLID DSLFDIFKDT EFGDTHFGGG DLLSILENLQ DSKDFAPIND NAVIINPTSK  60
ENELMESRKV SISSSVPQNF ETELEISPET KTNKLSPTLP EEPQKVSHIT VERNRRKQMN  120
YNLSVLRSLM PSFYAKRGDQ ASIIEGVVDY INELQQLLQC LEAKKQRKVY SDVLSPRLVS  180
STRPSPLSPR INLPISPRTP QPGSPYKPSY LSPTIPNSPT SSASSSINDN IKELVANSKS  240
VIADVQVKFS GPHLLLKTVS PPIPGQALRI ISALEDLALE ILHVNINIAD ETMLNSFTIK  300
IGIECQLSAE ELAQQIQQTF Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-180AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503231.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C73e-93SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0S3RN230.0A0A0S3RN23_PHAAN; Uncharacterized protein
STRINGGLYMA13G08740.21e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.18e-93bHLH family protein